windowmasker.log


                    
vecscreen_analyse.log


                    
tbl2asn.log

[tbl2asn] Validating ed8b70cdccb8e16e3bfa09ea_n

swiss-prot.log

diamond v2.0.7.145 (C) Max Planck Society for the Advancement of Science
Documentation, support and updates available at http://www.diamondsearch.org

#CPU threads: 2
Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
Temporary directory: /opt/mosga/snakemake/../gui/uploads/ec6d1246/genes/swissprot
Opening the database...  [0.186s]
#Target sequences to report alignments for: 25
Reference = /opt/mosga/tools/diamond/swissprot.dmnd
Sequences = 565254
Letters = 203850821
Block size = 2000000000
Opening the input file...  [0.004s]
Opening the output file...  [0s]
Loading query sequences...  [0.042s]
Masking queries...  [0.21s]
Building query seed set...  [0.053s]
Algorithm: Double-indexed
Building query histograms...  [0.086s]
Allocating buffers...  [0s]
Loading reference sequences...  [0.705s]
Masking reference...  [6.697s]
Initializing temporary storage...  [0s]
Building reference histograms...  [3.826s]
Allocating buffers...  [0s]
Processing query block 1, reference block 1/1, shape 1/2, index chunk 1/4.
Building reference seed array...  [2.217s]
Building query seed array...  [0.068s]
Computing hash join...  [0.333s]
Building seed filter...  [0.002s]
Searching alignments...  [0.037s]
Processing query block 1, reference block 1/1, shape 1/2, index chunk 2/4.
Building reference seed array...  [2.504s]
Building query seed array...  [0.078s]
Computing hash join...  [0.353s]
Building seed filter...  [0.001s]
Searching alignments...  [0.036s]
Processing query block 1, reference block 1/1, shape 1/2, index chunk 3/4.
Building reference seed array...  [3.017s]
Building query seed array...  [0.077s]
Computing hash join...  [0.339s]
Building seed filter...  [0.002s]
Searching alignments...  [0.037s]
Processing query block 1, reference block 1/1, shape 1/2, index chunk 4/4.
Building reference seed array...  [1.994s]
Building query seed array...  [0.055s]
Computing hash join...  [0.336s]
Building seed filter...  [0.002s]
Searching alignments...  [0.038s]
Processing query block 1, reference block 1/1, shape 2/2, index chunk 1/4.
Building reference seed array...  [2.343s]
Building query seed array...  [0.061s]
Computing hash join...  [0.337s]
Building seed filter...  [0.002s]
Searching alignments...  [0.034s]
Processing query block 1, reference block 1/1, shape 2/2, index chunk 2/4.
Building reference seed array...  [2.624s]
Building query seed array...  [0.078s]
Computing hash join...  [0.328s]
Building seed filter...  [0.002s]
Searching alignments...  [0.032s]
Processing query block 1, reference block 1/1, shape 2/2, index chunk 3/4.
Building reference seed array...  [2.621s]
Building query seed array...  [0.074s]
Computing hash join...  [0.34s]
Building seed filter...  [0.002s]
Searching alignments...  [0.044s]
Processing query block 1, reference block 1/1, shape 2/2, index chunk 4/4.
Building reference seed array...  [2.019s]
Building query seed array...  [0.071s]
Computing hash join...  [0.36s]
Building seed filter...  [0.002s]
Searching alignments...  [0.03s]
Deallocating buffers...  [0.04s]
Clearing query masking...  [0.001s]
Computing alignments...  [2.749s]
Deallocating reference...  [0.019s]
Loading reference sequences...  [0s]
Deallocating buffers...  [0s]
Deallocating queries...  [0s]
Loading query sequences...  [0s]
Closing the input file...  [0s]
Closing the output file...  [0s]
Closing the database file...  [0.004s]
Deallocating taxonomy...  [0s]
Total time = 37.697s
Reported 2732 pairwise alignments, 2732 HSPs.
181 queries aligned.
plastids.log

diamond v2.0.7.145 (C) Max Planck Society for the Advancement of Science
Documentation, support and updates available at http://www.diamondsearch.org

#CPU threads: 2
Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
Temporary directory: /opt/mosga/snakemake/../gui/uploads/ec6d1246/genes
Opening the database...  [0.015s]
#Target sequences to report alignments for: 25
Reference = /opt/mosga/tools/diamond/plastid.dmnd
Sequences = 10966
Letters = 5032614
Block size = 4000000000
Opening the input file...  [0.025s]
Opening the output file...  [0s]
Loading query sequences...  [0.072s]
Masking queries...  [0.3s]
Building query seed set...  [0.069s]
Algorithm: Double-indexed
Building query histograms...  [0.132s]
Allocating buffers...  [0s]
Loading reference sequences...  [0.01s]
Masking reference...  [0.168s]
Initializing temporary storage...  [0.001s]
Building reference histograms...  [0.073s]
Allocating buffers...  [0s]
Processing query block 1, reference block 1/1, shape 1/2, index chunk 1/4.
Building reference seed array...  [0.054s]
Building query seed array...  [0.082s]
Computing hash join...  [0.022s]
Building seed filter...  [0.001s]
Searching alignments...  [0.001s]
Processing query block 1, reference block 1/1, shape 1/2, index chunk 2/4.
Building reference seed array...  [0.076s]
Building query seed array...  [0.098s]
Computing hash join...  [0.023s]
Building seed filter...  [0s]
Searching alignments...  [0.001s]
Processing query block 1, reference block 1/1, shape 1/2, index chunk 3/4.
Building reference seed array...  [0.07s]
Building query seed array...  [0.101s]
Computing hash join...  [0.022s]
Building seed filter...  [0s]
Searching alignments...  [0.001s]
Processing query block 1, reference block 1/1, shape 1/2, index chunk 4/4.
Building reference seed array...  [0.053s]
Building query seed array...  [0.079s]
Computing hash join...  [0.024s]
Building seed filter...  [0s]
Searching alignments...  [0.001s]
Processing query block 1, reference block 1/1, shape 2/2, index chunk 1/4.
Building reference seed array...  [0.054s]
Building query seed array...  [0.083s]
Computing hash join...  [0.023s]
Building seed filter...  [0s]
Searching alignments...  [0.002s]
Processing query block 1, reference block 1/1, shape 2/2, index chunk 2/4.
Building reference seed array...  [0.07s]
Building query seed array...  [0.125s]
Computing hash join...  [0.027s]
Building seed filter...  [0s]
Searching alignments...  [0.001s]
Processing query block 1, reference block 1/1, shape 2/2, index chunk 3/4.
Building reference seed array...  [0.067s]
Building query seed array...  [0.107s]
Computing hash join...  [0.025s]
Building seed filter...  [0s]
Searching alignments...  [0.001s]
Processing query block 1, reference block 1/1, shape 2/2, index chunk 4/4.
Building reference seed array...  [0.048s]
Building query seed array...  [0.09s]
Computing hash join...  [0.024s]
Building seed filter...  [0s]
Searching alignments...  [0.001s]
Deallocating buffers...  [0.001s]
Clearing query masking...  [0.001s]
Computing alignments...  [0.19s]
Deallocating reference...  [0s]
Loading reference sequences...  [0s]
Deallocating buffers...  [0.002s]
Deallocating queries...  [0s]
Loading query sequences...  [0s]
Closing the input file...  [0s]
Closing the output file...  [0s]
Closing the database file...  [0s]
Deallocating taxonomy...  [0s]
Total time = 2.674s
Reported 25 pairwise alignments, 25 HSPs.
1 queries aligned.
mitos.log

diamond v2.0.7.145 (C) Max Planck Society for the Advancement of Science
Documentation, support and updates available at http://www.diamondsearch.org

#CPU threads: 2
Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
Temporary directory: /opt/mosga/snakemake/../gui/uploads/ec6d1246/genes
Opening the database...  [0.03s]
#Target sequences to report alignments for: 25
Reference = /opt/mosga/tools/diamond/mito.dmnd
Sequences = 29848
Letters = 7941243
Block size = 4000000000
Opening the input file...  [0.023s]
Opening the output file...  [0s]
Loading query sequences...  [0.059s]
Masking queries...  [0.326s]
Building query seed set...  [0.083s]
Algorithm: Double-indexed
Building query histograms...  [0.149s]
Allocating buffers...  [0s]
Loading reference sequences...  [0.024s]
Masking reference...  [0.268s]
Initializing temporary storage...  [0s]
Building reference histograms...  [0.121s]
Allocating buffers...  [0s]
Processing query block 1, reference block 1/1, shape 1/2, index chunk 1/4.
Building reference seed array...  [0.105s]
Building query seed array...  [0.106s]
Computing hash join...  [0.03s]
Building seed filter...  [0.001s]
Searching alignments...  [0.078s]
Processing query block 1, reference block 1/1, shape 1/2, index chunk 2/4.
Building reference seed array...  [0.134s]
Building query seed array...  [0.123s]
Computing hash join...  [0.033s]
Building seed filter...  [0s]
Searching alignments...  [0.008s]
Processing query block 1, reference block 1/1, shape 1/2, index chunk 3/4.
Building reference seed array...  [0.133s]
Building query seed array...  [0.132s]
Computing hash join...  [0.035s]
Building seed filter...  [0s]
Searching alignments...  [0.005s]
Processing query block 1, reference block 1/1, shape 1/2, index chunk 4/4.
Building reference seed array...  [0.112s]
Building query seed array...  [0.111s]
Computing hash join...  [0.037s]
Building seed filter...  [0s]
Searching alignments...  [0.006s]
Processing query block 1, reference block 1/1, shape 2/2, index chunk 1/4.
Building reference seed array...  [0.078s]
Building query seed array...  [0.076s]
Computing hash join...  [0.028s]
Building seed filter...  [0s]
Searching alignments...  [0.004s]
Processing query block 1, reference block 1/1, shape 2/2, index chunk 2/4.
Building reference seed array...  [0.099s]
Building query seed array...  [0.104s]
Computing hash join...  [0.028s]
Building seed filter...  [0s]
Searching alignments...  [0.005s]
Processing query block 1, reference block 1/1, shape 2/2, index chunk 3/4.
Building reference seed array...  [0.104s]
Building query seed array...  [0.109s]
Computing hash join...  [0.029s]
Building seed filter...  [0s]
Searching alignments...  [0.004s]
Processing query block 1, reference block 1/1, shape 2/2, index chunk 4/4.
Building reference seed array...  [0.081s]
Building query seed array...  [0.077s]
Computing hash join...  [0.031s]
Building seed filter...  [0s]
Searching alignments...  [0.007s]
Deallocating buffers...  [0.001s]
Clearing query masking...  [0.001s]
Computing alignments...  [0.734s]
Deallocating reference...  [0s]
Loading reference sequences...  [0s]
Deallocating buffers...  [0s]
Deallocating queries...  [0s]
Loading query sequences...  [0s]
Closing the input file...  [0s]
Closing the output file...  [0s]
Closing the database file...  [0s]
Deallocating taxonomy...  [0s]
Total time = 4.028s
Reported 25 pairwise alignments, 25 HSPs.
1 queries aligned.
jbrowse.log

Overwrote track "MOSGA" in /opt/mosga/snakemake/../gui/uploads/ec6d1246/jbrowse/config.json
genome_chopping.log

0.2 Mbp
0.5 Mbp
0.7 Mbp
0.9 Mbp
1.0 Mbp
1.2 Mbp
1.4 Mbp
1.5 Mbp
1.6 Mbp
1.8 Mbp
1.9 Mbp
2.0 Mbp
2.2 Mbp
2.3 Mbp
2.4 Mbp
2.5 Mbp
2.6 Mbp
2.7 Mbp
2.8 Mbp
2.9 Mbp
3.1 Mbp
3.1 Mbp
3.2 Mbp
3.3 Mbp
3.4 Mbp
3.5 Mbp
3.5 Mbp
3.6 Mbp
3.6 Mbp
3.7 Mbp
3.7 Mbp
3.8 Mbp
3.8 Mbp
3.8 Mbp
3.9 Mbp
3.9 Mbp
3.9 Mbp
3.9 Mbp
4.0 Mbp
4.0 Mbp
4.0 Mbp
4.0 Mbp
4.1 Mbp
4.1 Mbp
4.1 Mbp
4.1 Mbp
4.1 Mbp
4.2 Mbp
4.2 Mbp
4.2 Mbp
4.2 Mbp
4.2 Mbp
4.2 Mbp
4.2 Mbp
4.3 Mbp
4.3 Mbp
4.3 Mbp
4.3 Mbp
4.3 Mbp
4.3 Mbp
4.3 Mbp
4.3 Mbp
4.3 Mbp
4.3 Mbp
4.3 Mbp
4.3 Mbp
4.3 Mbp
4.4 Mbp
busco.log

Source: eukaryota_odb10
  Value Percentage                Category
0    10       3.92  Complete (single-copy)
1     0       0.00   Complete (duplicated)
2     4       1.57              Fragmented
3   241      94.51                 Missing
barrnap.log


                    
augustus.log