writer.log

+----------------+-------------+---------------+-------------+----------------+---------------+---------------------+
|    Scaffold    | Internal_Ns | NCBI_Filtered | No_triplets | No_start_codon | No_stop_codon | Internal_stop_codon |
+----------------+-------------+---------------+-------------+----------------+---------------+---------------------+
| VLTN01000001.1 |      0      |       0       |      0      |       73       |       0       |          0          |
| VLTN01000002.1 |      0      |       0       |      0      |       62       |       0       |          0          |
| VLTN01000003.1 |      0      |       0       |      0      |       64       |       0       |          0          |
| VLTN01000004.1 |      0      |       0       |      0      |       45       |       0       |          0          |
| VLTN01000005.1 |      0      |       0       |      0      |       41       |       0       |          0          |
| VLTN01000006.1 |      0      |       0       |      0      |       50       |       0       |          0          |
| VLTN01000007.1 |      0      |       0       |      0      |       38       |       0       |          0          |
| VLTN01000008.1 |      0      |       0       |      0      |       41       |       0       |          0          |
| VLTN01000009.1 |      0      |       0       |      0      |       29       |       0       |          0          |
| VLTN01000010.1 |      0      |       0       |      0      |       40       |       0       |          0          |
| VLTN01000011.1 |      0      |       5       |      0      |       16       |       0       |          0          |
| VLTN01000012.1 |      0      |       0       |      0      |       28       |       0       |          0          |
| VLTN01000013.1 |      0      |       0       |      0      |       42       |       0       |          0          |
| VLTN01000014.1 |      0      |       0       |      0      |       36       |       0       |          1          |
| VLTN01000015.1 |      0      |       0       |      0      |       42       |       0       |          0          |
| VLTN01000016.1 |      0      |       0       |      0      |       37       |       0       |          1          |
| VLTN01000017.1 |      0      |       0       |      0      |       35       |       0       |          0          |
| VLTN01000018.1 |      0      |       0       |      0      |       26       |       0       |          0          |
| VLTN01000019.1 |      0      |       0       |      0      |       27       |       0       |          0          |
| VLTN01000020.1 |      0      |       0       |      0      |       28       |       0       |          0          |
| VLTN01000021.1 |      0      |       0       |      0      |       37       |       0       |          0          |
| VLTN01000022.1 |      0      |       0       |      0      |       24       |       0       |          0          |
| VLTN01000023.1 |      0      |       0       |      0      |       23       |       0       |          0          |
| VLTN01000024.1 |      0      |       0       |      0      |       26       |       0       |          3          |
| VLTN01000025.1 |      0      |       0       |      0      |       26       |       0       |          0          |
| VLTN01000026.1 |      0      |       0       |      0      |       22       |       0       |          0          |
| VLTN01000027.1 |      0      |       0       |      0      |       16       |       0       |          1          |
| VLTN01000028.1 |      0      |       0       |      0      |       28       |       0       |          0          |
| VLTN01000029.1 |      0      |       0       |      0      |       18       |       0       |          2          |
| VLTN01000030.1 |      0      |       0       |      0      |       25       |       0       |          0          |
| VLTN01000031.1 |      0      |       0       |      0      |       23       |       0       |          0          |
| VLTN01000032.1 |      0      |       0       |      0      |       18       |       0       |          0          |
| VLTN01000033.1 |      0      |       0       |      0      |       25       |       0       |          1          |
| VLTN01000034.1 |      0      |       0       |      0      |       22       |       0       |          0          |
| VLTN01000035.1 |      0      |       0       |      0      |       13       |       0       |          0          |
| VLTN01000036.1 |      0      |       0       |      0      |       25       |       0       |          0          |
| VLTN01000037.1 |      0      |       0       |      0      |       12       |       0       |          0          |
| VLTN01000038.1 |      0      |       0       |      0      |       18       |       0       |          0          |
| VLTN01000039.1 |      0      |       0       |      0      |       13       |       0       |          1          |
| VLTN01000040.1 |      0      |       0       |      0      |       19       |       0       |          0          |
| VLTN01000041.1 |      0      |       0       |      0      |       22       |       0       |          2          |
| VLTN01000042.1 |      0      |       0       |      0      |       11       |       0       |          0          |
| VLTN01000043.1 |      0      |       0       |      0      |       24       |       0       |          0          |
| VLTN01000044.1 |      0      |       0       |      0      |       9        |       0       |          0          |
| VLTN01000045.1 |      0      |       0       |      0      |       15       |       0       |          0          |
| VLTN01000046.1 |      0      |       0       |      0      |       17       |       0       |          0          |
| VLTN01000047.1 |      0      |       0       |      0      |       13       |       0       |          0          |
| VLTN01000048.1 |      0      |       0       |      0      |       19       |       0       |          0          |
| VLTN01000049.1 |      0      |       0       |      0      |       13       |       0       |          0          |
| VLTN01000050.1 |      0      |       0       |      0      |       17       |       0       |          1          |
| VLTN01000051.1 |      0      |       0       |      0      |       10       |       0       |          0          |
| VLTN01000052.1 |      0      |       0       |      0      |       11       |       0       |          2          |
| VLTN01000053.1 |      0      |       0       |      0      |       9        |       0       |          0          |
| VLTN01000054.1 |      0      |       0       |      0      |       12       |       0       |          0          |
| VLTN01000055.1 |      0      |       0       |      0      |       9        |       0       |          0          |
| VLTN01000056.1 |      0      |       0       |      0      |       10       |       0       |          0          |
| VLTN01000057.1 |      0      |       0       |      0      |       16       |       0       |          1          |
| VLTN01000058.1 |      0      |       0       |      0      |       14       |       0       |          0          |
| VLTN01000059.1 |      0      |       0       |      0      |       14       |       0       |          0          |
| VLTN01000060.1 |      0      |       0       |      0      |       11       |       0       |          0          |
| VLTN01000061.1 |      0      |       0       |      0      |       10       |       0       |          0          |
| VLTN01000062.1 |      0      |       0       |      0      |       10       |       0       |          0          |
| VLTN01000063.1 |      0      |       0       |      0      |       8        |       0       |          1          |
| VLTN01000064.1 |      0      |       0       |      0      |       10       |       0       |          0          |
| VLTN01000065.1 |      0      |       0       |      0      |       8        |       0       |          0          |
| VLTN01000066.1 |      0      |       0       |      0      |       6        |       0       |          0          |
| VLTN01000067.1 |      0      |       0       |      0      |       6        |       0       |          0          |
| VLTN01000068.1 |      0      |       0       |      0      |       9        |       0       |          0          |
| VLTN01000069.1 |      0      |       0       |      0      |       9        |       0       |          0          |
| VLTN01000070.1 |      0      |       0       |      0      |       8        |       0       |          0          |
| VLTN01000071.1 |      0      |       0       |      0      |       9        |       0       |          0          |
| VLTN01000072.1 |      0      |       0       |      0      |       13       |       0       |          0          |
| VLTN01000073.1 |      0      |       0       |      0      |       11       |       0       |          0          |
| VLTN01000074.1 |      0      |       0       |      0      |       10       |       0       |          0          |
| VLTN01000075.1 |      0      |       0       |      0      |       11       |       0       |          0          |
| VLTN01000076.1 |      0      |       0       |      0      |       5        |       0       |          0          |
| VLTN01000077.1 |      0      |       0       |      0      |       10       |       0       |          0          |
| VLTN01000078.1 |      0      |       0       |      0      |       2        |       0       |          1          |
| VLTN01000079.1 |      0      |       0       |      0      |       7        |       0       |          1          |
| VLTN01000080.1 |      0      |       0       |      0      |       6        |       0       |          0          |
| VLTN01000081.1 |      0      |       0       |      0      |       10       |       0       |          0          |
| VLTN01000082.1 |      0      |       0       |      0      |       6        |       0       |          0          |
| VLTN01000083.1 |      0      |       0       |      0      |       6        |       0       |          0          |
| VLTN01000084.1 |      0      |       0       |      0      |       9        |       0       |          0          |
| VLTN01000085.1 |      0      |       0       |      0      |       1        |       0       |          0          |
| VLTN01000086.1 |      0      |       0       |      0      |       5        |       0       |          0          |
| VLTN01000087.1 |      0      |       0       |      0      |       0        |       0       |          0          |
| VLTN01000088.1 |      0      |       0       |      0      |       4        |       0       |          0          |
| VLTN01000089.1 |      0      |       0       |      0      |       7        |       0       |          0          |
| VLTN01000090.1 |      0      |       0       |      0      |       3        |       0       |          0          |
| VLTN01000091.1 |      0      |       0       |      0      |       5        |       0       |          0          |
| VLTN01000092.1 |      0      |       0       |      0      |       7        |       0       |          0          |
| VLTN01000093.1 |      0      |       0       |      0      |       3        |       0       |          0          |
| VLTN01000094.1 |      0      |       0       |      0      |       1        |       0       |          0          |
| VLTN01000095.1 |      0      |       0       |      0      |       4        |       0       |          0          |
| VLTN01000096.1 |      0      |       0       |      0      |       0        |       0       |          0          |
| VLTN01000097.1 |      0      |       0       |      0      |       8        |       0       |          0          |
| VLTN01000098.1 |      0      |       0       |      0      |       3        |       0       |          0          |
| VLTN01000099.1 |      0      |       0       |      0      |       1        |       0       |          0          |
| VLTN01000100.1 |      0      |       0       |      0      |       4        |       0       |          0          |
| VLTN01000101.1 |      0      |       0       |      0      |       2        |       0       |          0          |
| VLTN01000102.1 |      0      |       0       |      0      |       0        |       0       |          0          |
| VLTN01000103.1 |      0      |       0       |      0      |       4        |       0       |          0          |
| VLTN01000104.1 |      0      |       0       |      0      |       1        |       0       |          0          |
| VLTN01000105.1 |      0      |       0       |      0      |       2        |       0       |          0          |
| VLTN01000106.1 |      0      |       0       |      0      |       1        |       0       |          0          |
| VLTN01000107.1 |      0      |       0       |      0      |       2        |       0       |          0          |
| VLTN01000108.1 |      0      |       0       |      0      |       0        |       0       |          0          |
| VLTN01000109.1 |      0      |       0       |      0      |       5        |       0       |          0          |
| VLTN01000110.1 |      0      |       0       |      0      |       2        |       0       |          0          |
| VLTN01000111.1 |      0      |       0       |      0      |       0        |       0       |          0          |
| VLTN01000112.1 |      0      |       0       |      0      |       0        |       0       |          0          |
| VLTN01000113.1 |      0      |       0       |      0      |       0        |       0       |          0          |
| VLTN01000114.1 |      0      |       0       |      0      |       0        |       0       |          0          |
| VLTN01000115.1 |      0      |       0       |      0      |       1        |       0       |          0          |
| VLTN01000116.1 |      0      |       0       |      0      |       1        |       0       |          0          |
| VLTN01000117.1 |      0      |       0       |      0      |       0        |       0       |          0          |
| VLTN01000118.1 |      0      |       0       |      0      |       0        |       0       |          0          |
| VLTN01000119.1 |      0      |       0       |      0      |       0        |       0       |          0          |
| VLTN01000120.1 |      0      |       0       |      0      |       2        |       0       |          0          |
| VLTN01000121.1 |      0      |       0       |      0      |       0        |       0       |          0          |
| VLTN01000122.1 |      0      |       0       |      0      |       0        |       0       |          0          |
| VLTN01000123.1 |      0      |       0       |      0      |       3        |       0       |          0          |
| VLTN01000124.1 |      0      |       0       |      0      |       0        |       0       |          0          |
| VLTN01000125.1 |      0      |       0       |      0      |       1        |       0       |          0          |
| VLTN01000126.1 |      0      |       0       |      0      |       2        |       0       |          0          |
| VLTN01000127.1 |      0      |       0       |      0      |       1        |       0       |          0          |
| VLTN01000128.1 |      0      |       0       |      0      |       0        |       0       |          0          |
| VLTN01000129.1 |      0      |       0       |      0      |       0        |       0       |          0          |
| VLTN01000130.1 |      0      |       0       |      0      |       0        |       0       |          0          |
| VLTN01000131.1 |      0      |       0       |      0      |       1        |       0       |          0          |
| VLTN01000132.1 |      0      |       0       |      0      |       1        |       0       |          0          |
| VLTN01000133.1 |      0      |       0       |      0      |       1        |       0       |          0          |
| VLTN01000134.1 |      0      |       0       |      0      |       3        |       0       |          0          |
| VLTN01000135.1 |      0      |       0       |      0      |       1        |       0       |          0          |
| VLTN01000136.1 |      0      |       0       |      0      |       0        |       0       |          0          |
| VLTN01000137.1 |      0      |       0       |      0      |       1        |       0       |          0          |
| VLTN01000138.1 |      0      |       0       |      0      |       1        |       0       |          0          |
| VLTN01000139.1 |      0      |       0       |      0      |       1        |       0       |          0          |
| VLTN01000140.1 |      0      |       0       |      0      |       0        |       0       |          0          |
| VLTN01000141.1 |      0      |       0       |      0      |       1        |       0       |          0          |
| VLTN01000142.1 |      0      |       0       |      0      |       2        |       0       |          0          |
| VLTN01000143.1 |      0      |       0       |      0      |       1        |       0       |          0          |
| VLTN01000144.1 |      0      |       0       |      0      |       0        |       0       |          0          |
| VLTN01000145.1 |      0      |       0       |      0      |       4        |       0       |          0          |
| VLTN01000146.1 |      0      |       0       |      0      |       0        |       0       |          0          |
| VLTN01000147.1 |      0      |       0       |      0      |       1        |       0       |          0          |
| VLTN01000148.1 |      0      |       0       |      0      |       0        |       0       |          0          |
| VLTN01000149.1 |      0      |       0       |      0      |       0        |       0       |          0          |
| VLTN01000150.1 |      0      |       0       |      0      |       0        |       0       |          0          |
| VLTN01000151.1 |      0      |       0       |      0      |       0        |       0       |          0          |
| VLTN01000152.1 |      0      |       0       |      0      |       0        |       0       |          0          |
| VLTN01000153.1 |      0      |       0       |      0      |       1        |       0       |          0          |
| VLTN01000154.1 |      0      |       0       |      0      |       0        |       0       |          0          |
| VLTN01000155.1 |      0      |       0       |      0      |       1        |       0       |          0          |
| VLTN01000156.1 |      0      |       0       |      0      |       1        |       0       |          0          |
| VLTN01000157.1 |      0      |       0       |      0      |       0        |       0       |          0          |
| VLTN01000158.1 |      0      |       0       |      0      |       1        |       0       |          0          |
| VLTN01000159.1 |      0      |       0       |      0      |       0        |       0       |          0          |
| VLTN01000160.1 |      0      |       0       |      0      |       2        |       0       |          0          |
| VLTN01000161.1 |      0      |       0       |      0      |       0        |       0       |          0          |
| VLTN01000162.1 |      0      |       0       |      0      |       0        |       0       |          0          |
| VLTN01000163.1 |      0      |       0       |      0      |       0        |       0       |          0          |
| VLTN01000164.1 |      0      |       0       |      0      |       1        |       0       |          0          |
| VLTN01000165.1 |      0      |       0       |      0      |       0        |       0       |          0          |
| VLTN01000166.1 |      0      |       0       |      0      |       0        |       0       |          0          |
| VLTN01000167.1 |      0      |       0       |      0      |       1        |       0       |          0          |
| VLTN01000168.1 |      0      |       0       |      0      |       1        |       0       |          0          |
| VLTN01000169.1 |      0      |       0       |      0      |       0        |       0       |          0          |
|   CM017891.1   |      0      |       1       |      0      |       0        |       0       |          0          |
+----------------+-------------+---------------+-------------+----------------+---------------+---------------------+
+----------------+---------+------+------+-------+
|    Scaffold    | Repeats | Gene | tRNA | Total |
+----------------+---------+------+------+-------+
|     Total      |   5474  | 9639 |  44  | 15157 |
| VLTN01000001.1 |   147   | 412  |  0   |  559  |
| VLTN01000002.1 |   137   | 353  |  0   |  490  |
| VLTN01000003.1 |   130   | 351  |  0   |  481  |
| VLTN01000004.1 |    99   | 284  |  3   |  386  |
| VLTN01000005.1 |   100   | 251  |  0   |  351  |
| VLTN01000006.1 |   111   | 218  |  1   |  330  |
| VLTN01000007.1 |    98   | 224  |  0   |  322  |
| VLTN01000008.1 |    81   | 162  |  1   |  244  |
| VLTN01000009.1 |    96   | 171  |  3   |  270  |
| VLTN01000010.1 |   104   | 173  |  0   |  277  |
| VLTN01000011.1 |    77   | 168  |  0   |  245  |
| VLTN01000012.1 |    77   | 216  |  0   |  293  |
| VLTN01000013.1 |    72   | 186  |  0   |  258  |
| VLTN01000014.1 |   107   | 156  |  1   |  264  |
| VLTN01000015.1 |    71   | 187  |  0   |  258  |
| VLTN01000016.1 |    71   | 183  |  4   |  258  |
| VLTN01000017.1 |    92   | 170  |  2   |  264  |
| VLTN01000018.1 |    74   | 179  |  1   |  254  |
| VLTN01000019.1 |    85   | 147  |  0   |  232  |
| VLTN01000020.1 |    73   | 171  |  0   |  244  |
| VLTN01000021.1 |    78   | 157  |  0   |  235  |
| VLTN01000022.1 |    92   | 126  |  0   |  218  |
| VLTN01000023.1 |    51   | 152  |  0   |  203  |
| VLTN01000024.1 |    73   | 132  |  0   |  205  |
| VLTN01000025.1 |    60   |  99  |  1   |  160  |
| VLTN01000026.1 |    48   | 121  |  1   |  170  |
| VLTN01000027.1 |    49   | 130  |  9   |  188  |
| VLTN01000028.1 |    72   | 107  |  0   |  179  |
| VLTN01000029.1 |   117   |  85  |  1   |  203  |
| VLTN01000030.1 |    81   | 128  |  0   |  209  |
| VLTN01000031.1 |    68   | 109  |  0   |  177  |
| VLTN01000032.1 |    68   | 107  |  0   |  175  |
| VLTN01000033.1 |    58   | 124  |  0   |  182  |
| VLTN01000034.1 |    71   | 100  |  0   |  171  |
| VLTN01000035.1 |    40   | 122  |  0   |  162  |
| VLTN01000036.1 |    71   | 103  |  0   |  174  |
| VLTN01000037.1 |    27   |  85  |  0   |  112  |
| VLTN01000038.1 |    77   | 104  |  0   |  181  |
| VLTN01000039.1 |    61   |  87  |  0   |  148  |
| VLTN01000040.1 |    47   |  93  |  0   |  140  |
| VLTN01000041.1 |    32   |  94  |  0   |  126  |
| VLTN01000042.1 |    51   |  83  |  0   |  134  |
| VLTN01000043.1 |    52   |  67  |  0   |  119  |
| VLTN01000044.1 |    60   |  82  |  0   |  142  |
| VLTN01000045.1 |    53   |  86  |  0   |  139  |
| VLTN01000046.1 |    56   |  99  |  0   |  155  |
| VLTN01000047.1 |    13   |  88  |  8   |  109  |
| VLTN01000048.1 |    36   |  78  |  0   |  114  |
| VLTN01000049.1 |    39   |  70  |  0   |  109  |
| VLTN01000050.1 |    30   |  87  |  0   |  117  |
| VLTN01000051.1 |   112   |  45  |  0   |  157  |
| VLTN01000052.1 |    38   |  58  |  0   |   96  |
| VLTN01000053.1 |    35   |  82  |  0   |  117  |
| VLTN01000054.1 |    23   |  75  |  0   |   98  |
| VLTN01000055.1 |    40   |  42  |  0   |   82  |
| VLTN01000056.1 |    50   |  68  |  0   |  118  |
| VLTN01000057.1 |    43   |  73  |  0   |  116  |
| VLTN01000058.1 |    44   |  70  |  0   |  114  |
| VLTN01000059.1 |    27   |  45  |  0   |   72  |
| VLTN01000060.1 |    34   |  66  |  0   |  100  |
| VLTN01000061.1 |    35   |  57  |  0   |   92  |
| VLTN01000062.1 |    52   |  52  |  0   |  104  |
| VLTN01000063.1 |    40   |  55  |  0   |   95  |
| VLTN01000064.1 |    36   |  46  |  0   |   82  |
| VLTN01000065.1 |    18   |  59  |  0   |   77  |
| VLTN01000066.1 |    24   |  52  |  0   |   76  |
| VLTN01000067.1 |    20   |  51  |  2   |   73  |
| VLTN01000068.1 |    13   |  56  |  0   |   69  |
| VLTN01000069.1 |    31   |  26  |  0   |   57  |
| VLTN01000070.1 |    31   |  47  |  0   |   78  |
| VLTN01000071.1 |    27   |  60  |  0   |   87  |
| VLTN01000072.1 |    33   |  52  |  0   |   85  |
| VLTN01000073.1 |    39   |  57  |  0   |   96  |
| VLTN01000074.1 |    40   |  41  |  0   |   81  |
| VLTN01000075.1 |    44   |  35  |  0   |   79  |
| VLTN01000076.1 |    22   |  35  |  0   |   57  |
| VLTN01000077.1 |    15   |  52  |  0   |   67  |
| VLTN01000078.1 |    46   |  21  |  0   |   67  |
| VLTN01000079.1 |    34   |  29  |  0   |   63  |
| VLTN01000080.1 |    16   |  23  |  3   |   42  |
| VLTN01000081.1 |    20   |  31  |  0   |   51  |
| VLTN01000082.1 |    23   |  41  |  0   |   64  |
| VLTN01000083.1 |    24   |  27  |  0   |   51  |
| VLTN01000084.1 |    11   |  28  |  0   |   39  |
| VLTN01000085.1 |    28   |  18  |  0   |   46  |
| VLTN01000086.1 |    27   |  15  |  0   |   42  |
| VLTN01000087.1 |    10   |  17  |  0   |   27  |
| VLTN01000088.1 |    41   |  11  |  0   |   52  |
| VLTN01000089.1 |    24   |  21  |  0   |   45  |
| VLTN01000090.1 |    17   |  18  |  0   |   35  |
| VLTN01000091.1 |    22   |  15  |  0   |   37  |
| VLTN01000092.1 |    14   |  18  |  0   |   32  |
| VLTN01000093.1 |    12   |  29  |  0   |   41  |
| VLTN01000094.1 |    19   |  7   |  0   |   26  |
| VLTN01000095.1 |    16   |  20  |  0   |   36  |
| VLTN01000096.1 |    8    |  0   |  0   |   8   |
| VLTN01000097.1 |    3    |  18  |  0   |   21  |
| VLTN01000098.1 |    2    |  20  |  0   |   22  |
| VLTN01000099.1 |    15   |  14  |  0   |   29  |
| VLTN01000100.1 |    10   |  10  |  0   |   20  |
| VLTN01000101.1 |    22   |  11  |  1   |   34  |
| VLTN01000102.1 |    2    |  1   |  0   |   3   |
| VLTN01000103.1 |    12   |  14  |  0   |   26  |
| VLTN01000104.1 |    13   |  12  |  0   |   25  |
| VLTN01000105.1 |    11   |  17  |  0   |   28  |
| VLTN01000106.1 |    4    |  14  |  0   |   18  |
| VLTN01000107.1 |    4    |  0   |  0   |   4   |
| VLTN01000108.1 |    4    |  1   |  0   |   5   |
| VLTN01000109.1 |    10   |  3   |  0   |   13  |
| VLTN01000110.1 |    11   |  12  |  0   |   23  |
| VLTN01000111.1 |    12   |  1   |  0   |   13  |
| VLTN01000112.1 |    7    |  0   |  0   |   7   |
| VLTN01000113.1 |    11   |  3   |  0   |   14  |
| VLTN01000114.1 |    4    |  0   |  0   |   4   |
| VLTN01000115.1 |    6    |  0   |  0   |   6   |
| VLTN01000116.1 |    12   |  1   |  0   |   13  |
| VLTN01000117.1 |    2    |  3   |  0   |   5   |
| VLTN01000118.1 |    5    |  4   |  0   |   9   |
| VLTN01000119.1 |    6    |  0   |  0   |   6   |
| VLTN01000120.1 |    5    |  3   |  0   |   8   |
| VLTN01000121.1 |    7    |  1   |  0   |   8   |
| VLTN01000122.1 |    5    |  0   |  0   |   5   |
| VLTN01000123.1 |    4    |  7   |  0   |   11  |
| VLTN01000124.1 |    0    |  1   |  0   |   1   |
| VLTN01000125.1 |    3    |  6   |  0   |   9   |
| VLTN01000126.1 |    6    |  4   |  0   |   10  |
| VLTN01000127.1 |    9    |  4   |  0   |   13  |
| VLTN01000128.1 |    1    |  0   |  0   |   1   |
| VLTN01000129.1 |    14   |  9   |  0   |   23  |
| VLTN01000130.1 |    13   |  5   |  0   |   18  |
| VLTN01000131.1 |    12   |  5   |  0   |   17  |
| VLTN01000132.1 |    2    |  4   |  0   |   6   |
| VLTN01000133.1 |    9    |  5   |  0   |   14  |
| VLTN01000134.1 |    9    |  5   |  0   |   14  |
| VLTN01000135.1 |    7    |  10  |  0   |   17  |
| VLTN01000136.1 |    10   |  5   |  0   |   15  |
| VLTN01000137.1 |    3    |  5   |  0   |   8   |
| VLTN01000138.1 |    8    |  3   |  0   |   11  |
| VLTN01000139.1 |    8    |  3   |  0   |   11  |
| VLTN01000140.1 |    8    |  2   |  0   |   10  |
| VLTN01000141.1 |    8    |  4   |  0   |   12  |
| VLTN01000142.1 |    5    |  5   |  0   |   10  |
| VLTN01000143.1 |    6    |  5   |  0   |   11  |
| VLTN01000144.1 |    5    |  0   |  0   |   5   |
| VLTN01000145.1 |    2    |  5   |  0   |   7   |
| VLTN01000146.1 |    6    |  2   |  0   |   8   |
| VLTN01000147.1 |    3    |  0   |  0   |   3   |
| VLTN01000148.1 |    9    |  2   |  0   |   11  |
| VLTN01000149.1 |    7    |  2   |  0   |   9   |
| VLTN01000150.1 |    4    |  1   |  0   |   5   |
| VLTN01000151.1 |    4    |  4   |  0   |   8   |
| VLTN01000152.1 |    11   |  3   |  0   |   14  |
| VLTN01000153.1 |    4    |  3   |  0   |   7   |
| VLTN01000154.1 |    5    |  8   |  0   |   13  |
| VLTN01000155.1 |    3    |  2   |  0   |   5   |
| VLTN01000156.1 |    4    |  0   |  0   |   4   |
| VLTN01000157.1 |    5    |  2   |  0   |   7   |
| VLTN01000158.1 |    4    |  0   |  0   |   4   |
| VLTN01000159.1 |    5    |  2   |  0   |   7   |
| VLTN01000160.1 |    4    |  4   |  0   |   8   |
| VLTN01000161.1 |    6    |  4   |  0   |   10  |
| VLTN01000162.1 |    5    |  0   |  0   |   5   |
| VLTN01000163.1 |    3    |  3   |  0   |   6   |
| VLTN01000164.1 |    2    |  2   |  0   |   4   |
| VLTN01000165.1 |    4    |  7   |  0   |   11  |
| VLTN01000166.1 |    1    |  4   |  0   |   5   |
| VLTN01000167.1 |    1    |  2   |  0   |   3   |
| VLTN01000168.1 |    2    |  4   |  0   |   6   |
| VLTN01000169.1 |    4    |  0   |  0   |   4   |
|   CM017891.1   |    0    |  0   |  2   |   2   |
+----------------+---------+------+------+-------+
22.34 s: Finished
vecscreen_analyse.log


                    
tbl2asn.log

[tbl2asn] ERROR: Bad location on feature repeat_region (start 854, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 5659, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 6454, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 1316, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 7298, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 2118, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 1636, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 17452, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 11614, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 6870, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 8604, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 12610, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 8409, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 18058, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 5139, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 1990, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 13515, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 1483, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 2435, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 1800, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 4624, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 2778, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 12460, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 1523, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 4483, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 4458, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 4603, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 823, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 5729, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 316, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 3556, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 2289, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 10019, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 5482, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 5240, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 5881, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 9208, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 10257, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 576, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 13345, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 2442, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 2438, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 12243, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 6578, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 7277, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 212, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 6053, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 4187, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 6070, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 6007, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 10086, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 3292, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 578, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 180, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 3711, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 11301, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 7535, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 3381, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 9413, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 4897, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 3459, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 7659, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 9732, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 144, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 2414, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 651, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 23918, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 5856, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 9765, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 2178, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 7251, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 200, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 222, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 105, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 372, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 111, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 220, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 15768, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 15034, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 5857, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 4345, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 121, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 3525, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 16636, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 2376, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 13381, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 23059, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 955, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 675, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 4440, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 7088, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 1748, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 173, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 6177, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 2509, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 6039, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 2896, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 3933, stop -1)
[tbl2asn] ERROR: Bad location on feature repeat_region (start 3594, stop -1)
[tbl2asn] Validating 744186cafaeb2886bdacd89e_n

swiss-prot.log

diamond v2.0.7.145 (C) Max Planck Society for the Advancement of Science
Documentation, support and updates available at http://www.diamondsearch.org

#CPU threads: 2
Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
Temporary directory: /opt/mosga/snakemake/../gui/uploads/9237305b/genes/swissprot
Opening the database...  [0.844s]
#Target sequences to report alignments for: 25
Reference = /opt/mosga/tools/diamond/swissprot.dmnd
Sequences = 565254
Letters = 203850821
Block size = 2000000000
Opening the input file...  [0.04s]
Opening the output file...  [0s]
Loading query sequences...  [0.369s]
Masking queries...  [1.601s]
Building query seed set...  [0.063s]
Algorithm: Double-indexed
Building query histograms...  [0.76s]
Allocating buffers...  [0s]
Loading reference sequences...  [3.778s]
Masking reference...  [6.736s]
Initializing temporary storage...  [0s]
Building reference histograms...  [2.935s]
Allocating buffers...  [0s]
Processing query block 1, reference block 1/1, shape 1/2, index chunk 1/4.
Building reference seed array...  [2.266s]
Building query seed array...  [0.461s]
Computing hash join...  [0.661s]
Building seed filter...  [0.014s]
Searching alignments...  [0.372s]
Processing query block 1, reference block 1/1, shape 1/2, index chunk 2/4.
Building reference seed array...  [2.561s]
Building query seed array...  [0.56s]
Computing hash join...  [0.644s]
Building seed filter...  [0.022s]
Searching alignments...  [0.334s]
Processing query block 1, reference block 1/1, shape 1/2, index chunk 3/4.
Building reference seed array...  [2.89s]
Building query seed array...  [0.643s]
Computing hash join...  [0.635s]
Building seed filter...  [0.01s]
Searching alignments...  [0.322s]
Processing query block 1, reference block 1/1, shape 1/2, index chunk 4/4.
Building reference seed array...  [1.968s]
Building query seed array...  [0.409s]
Computing hash join...  [0.593s]
Building seed filter...  [0.014s]
Searching alignments...  [0.314s]
Processing query block 1, reference block 1/1, shape 2/2, index chunk 1/4.
Building reference seed array...  [1.972s]
Building query seed array...  [0.54s]
Computing hash join...  [0.575s]
Building seed filter...  [0.011s]
Searching alignments...  [0.267s]
Processing query block 1, reference block 1/1, shape 2/2, index chunk 2/4.
Building reference seed array...  [2.486s]
Building query seed array...  [0.546s]
Computing hash join...  [0.594s]
Building seed filter...  [0.01s]
Searching alignments...  [0.281s]
Processing query block 1, reference block 1/1, shape 2/2, index chunk 3/4.
Building reference seed array...  [2.622s]
Building query seed array...  [0.546s]
Computing hash join...  [0.596s]
Building seed filter...  [0.009s]
Searching alignments...  [0.255s]
Processing query block 1, reference block 1/1, shape 2/2, index chunk 4/4.
Building reference seed array...  [1.994s]
Building query seed array...  [0.427s]
Computing hash join...  [0.594s]
Building seed filter...  [0.01s]
Searching alignments...  [0.264s]
Deallocating buffers...  [0.041s]
Clearing query masking...  [0.007s]
Computing alignments...  [22.011s]
Deallocating reference...  [0.013s]
Loading reference sequences...  [0s]
Deallocating buffers...  [0.006s]
Deallocating queries...  [0.003s]
Loading query sequences...  [0s]
Closing the input file...  [0.001s]
Closing the output file...  [0.008s]
Closing the database file...  [0.004s]
Deallocating taxonomy...  [0s]
Total time = 69.663s
Reported 31331 pairwise alignments, 31331 HSPs.
2106 queries aligned.
red.log


This is Red (REpeat Detector) designed and developed by Hani Zakaria Girgis, PhD.

Version: 05/22/2015

Calculating the length, k, of the k-mer based on the input genome ... 
The recommended k is 12.

Using the default background order: 5.
Using the default threshold: 2.
Using the default minimum of the observed count of k-mers: 3.
Calculating GC content ...
Using the default half width: 40 based on the GC content of 70.0647

List of final parameters: 
-frm: 2
-gau: 40
-gnm: /opt/mosga/snakemake/../gui/uploads/9237305b/repeats/red/genome
-len: 12
-min: 3
-msk: /opt/mosga/snakemake/../gui/uploads/9237305b/repeats/red/masked
-ord: 5
-rpt: /opt/mosga/snakemake/../gui/uploads/9237305b/repeats/red/repeats
-thr: 2

Deleting pre-existing files under /opt/mosga/snakemake/../gui/uploads/9237305b/repeats/red/masked
Deleting pre-existing files under /opt/mosga/snakemake/../gui/uploads/9237305b/repeats/red/repeats


Stage 1: Building the table ...
Counting k-mers in /opt/mosga/snakemake/../gui/uploads/9237305b/repeats/red/genome/genome.fa ...
Processing 0 keys out of 16777216
Processing 10000000 keys out of 16777216
Enrichment view is ready.


Stage 2: Calculating the percentage ...
Calculating the percentage in: /opt/mosga/snakemake/../gui/uploads/9237305b/repeats/red/genome/genome.fa ...
The percentage is 56.7034


Stage 3: Training ...
The number of states is: 26
Training on: /opt/mosga/snakemake/../gui/uploads/9237305b/repeats/red/genome/genome.fa


Stage 4: Scanning ...
Scanning: /opt/mosga/snakemake/../gui/uploads/9237305b/repeats/red/genome/genome.fa
Printing locations to: /opt/mosga/snakemake/../gui/uploads/9237305b/repeats/red/repeats/genome.rpt
Printing masked sequence to: /opt/mosga/snakemake/../gui/uploads/9237305b/repeats/red/masked/genome.msk
plastids.log

diamond v2.0.7.145 (C) Max Planck Society for the Advancement of Science
Documentation, support and updates available at http://www.diamondsearch.org

#CPU threads: 2
Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
Temporary directory: /opt/mosga/snakemake/../gui/uploads/9237305b/genes
Opening the database...  [0.197s]
#Target sequences to report alignments for: 25
Reference = /opt/mosga/tools/diamond/plastid.dmnd
Sequences = 10966
Letters = 5032614
Block size = 4000000000
Opening the input file...  [0.231s]
Opening the output file...  [0s]
Loading query sequences...  [0.547s]
Masking queries...  [2.499s]
Building query seed set...  [0.066s]
Algorithm: Double-indexed
Building query histograms...  [1.238s]
Allocating buffers...  [0s]
Loading reference sequences...  [0.017s]
Masking reference...  [0.191s]
Initializing temporary storage...  [0.001s]
Building reference histograms...  [0.087s]
Allocating buffers...  [0s]
Processing query block 1, reference block 1/1, shape 1/2, index chunk 1/4.
Building reference seed array...  [0.055s]
Building query seed array...  [0.743s]
Computing hash join...  [0.187s]
Building seed filter...  [0.002s]
Searching alignments...  [0.009s]
Processing query block 1, reference block 1/1, shape 1/2, index chunk 2/4.
Building reference seed array...  [0.076s]
Building query seed array...  [1.049s]
Computing hash join...  [0.202s]
Building seed filter...  [0.001s]
Searching alignments...  [0.008s]
Processing query block 1, reference block 1/1, shape 1/2, index chunk 3/4.
Building reference seed array...  [0.087s]
Building query seed array...  [0.932s]
Computing hash join...  [0.202s]
Building seed filter...  [0.001s]
Searching alignments...  [0.008s]
Processing query block 1, reference block 1/1, shape 1/2, index chunk 4/4.
Building reference seed array...  [0.052s]
Building query seed array...  [0.917s]
Computing hash join...  [0.2s]
Building seed filter...  [0.001s]
Searching alignments...  [0.009s]
Processing query block 1, reference block 1/1, shape 2/2, index chunk 1/4.
Building reference seed array...  [0.07s]
Building query seed array...  [0.727s]
Computing hash join...  [0.194s]
Building seed filter...  [0.001s]
Searching alignments...  [0.008s]
Processing query block 1, reference block 1/1, shape 2/2, index chunk 2/4.
Building reference seed array...  [0.086s]
Building query seed array...  [0.894s]
Computing hash join...  [0.201s]
Building seed filter...  [0.003s]
Searching alignments...  [0.007s]
Processing query block 1, reference block 1/1, shape 2/2, index chunk 3/4.
Building reference seed array...  [0.069s]
Building query seed array...  [0.957s]
Computing hash join...  [0.177s]
Building seed filter...  [0.001s]
Searching alignments...  [0.007s]
Processing query block 1, reference block 1/1, shape 2/2, index chunk 4/4.
Building reference seed array...  [0.061s]
Building query seed array...  [0.745s]
Computing hash join...  [0.174s]
Building seed filter...  [0.001s]
Searching alignments...  [0.01s]
Deallocating buffers...  [0s]
Clearing query masking...  [0.01s]
Computing alignments...  [0.798s]
Deallocating reference...  [0s]
Loading reference sequences...  [0s]
Deallocating buffers...  [0.01s]
Deallocating queries...  [0.004s]
Loading query sequences...  [0s]
Closing the input file...  [0.002s]
Closing the output file...  [0.002s]
Closing the database file...  [0s]
Deallocating taxonomy...  [0s]
Total time = 15.19s
Reported 349 pairwise alignments, 349 HSPs.
27 queries aligned.
mitos.log

diamond v2.0.7.145 (C) Max Planck Society for the Advancement of Science
Documentation, support and updates available at http://www.diamondsearch.org

#CPU threads: 2
Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
Temporary directory: /opt/mosga/snakemake/../gui/uploads/9237305b/genes
Opening the database...  [0.235s]
#Target sequences to report alignments for: 25
Reference = /opt/mosga/tools/diamond/mito.dmnd
Sequences = 29848
Letters = 7941243
Block size = 4000000000
Opening the input file...  [0.213s]
Opening the output file...  [0s]
Loading query sequences...  [0.532s]
Masking queries...  [2.846s]
Building query seed set...  [0.063s]
Algorithm: Double-indexed
Building query histograms...  [1.209s]
Allocating buffers...  [0s]
Loading reference sequences...  [0.026s]
Masking reference...  [0.274s]
Initializing temporary storage...  [0s]
Building reference histograms...  [0.125s]
Allocating buffers...  [0s]
Processing query block 1, reference block 1/1, shape 1/2, index chunk 1/4.
Building reference seed array...  [0.127s]
Building query seed array...  [1.045s]
Computing hash join...  [0.193s]
Building seed filter...  [0.001s]
Searching alignments...  [0.056s]
Processing query block 1, reference block 1/1, shape 1/2, index chunk 2/4.
Building reference seed array...  [0.114s]
Building query seed array...  [0.949s]
Computing hash join...  [0.218s]
Building seed filter...  [0.001s]
Searching alignments...  [0.018s]
Processing query block 1, reference block 1/1, shape 1/2, index chunk 3/4.
Building reference seed array...  [0.157s]
Building query seed array...  [1.1s]
Computing hash join...  [0.201s]
Building seed filter...  [0.001s]
Searching alignments...  [0.017s]
Processing query block 1, reference block 1/1, shape 1/2, index chunk 4/4.
Building reference seed array...  [0.082s]
Building query seed array...  [0.724s]
Computing hash join...  [0.194s]
Building seed filter...  [0.001s]
Searching alignments...  [0.016s]
Processing query block 1, reference block 1/1, shape 2/2, index chunk 1/4.
Building reference seed array...  [0.118s]
Building query seed array...  [0.967s]
Computing hash join...  [0.18s]
Building seed filter...  [0.001s]
Searching alignments...  [0.015s]
Processing query block 1, reference block 1/1, shape 2/2, index chunk 2/4.
Building reference seed array...  [0.097s]
Building query seed array...  [0.894s]
Computing hash join...  [0.225s]
Building seed filter...  [0.003s]
Searching alignments...  [0.016s]
Processing query block 1, reference block 1/1, shape 2/2, index chunk 3/4.
Building reference seed array...  [0.131s]
Building query seed array...  [1.047s]
Computing hash join...  [0.203s]
Building seed filter...  [0.001s]
Searching alignments...  [0.016s]
Processing query block 1, reference block 1/1, shape 2/2, index chunk 4/4.
Building reference seed array...  [0.081s]
Building query seed array...  [0.79s]
Computing hash join...  [0.188s]
Building seed filter...  [0.001s]
Searching alignments...  [0.014s]
Deallocating buffers...  [0s]
Clearing query masking...  [0.011s]
Computing alignments...  [1.282s]
Deallocating reference...  [0s]
Loading reference sequences...  [0s]
Deallocating buffers...  [0.01s]
Deallocating queries...  [0.004s]
Loading query sequences...  [0s]
Closing the input file...  [0.001s]
Closing the output file...  [0s]
Closing the database file...  [0s]
Deallocating taxonomy...  [0s]
Total time = 17.252s
Reported 133 pairwise alignments, 133 HSPs.
12 queries aligned.
jbrowse2_out.log


                    
jbrowse.log

Overwrote track "barrnap" in /opt/mosga/snakemake/../gui/uploads/9237305b/jbrowse/config.json
independent_tools.log


                    
genome_chopping.log

1.5 Mbp
2.9 Mbp
4.1 Mbp
5.0 Mbp
5.9 Mbp
6.7 Mbp
7.5 Mbp
8.2 Mbp
9.0 Mbp
9.7 Mbp
10.4 Mbp
11.0 Mbp
11.6 Mbp
12.2 Mbp
12.9 Mbp
13.5 Mbp
14.0 Mbp
14.6 Mbp
15.2 Mbp
15.7 Mbp
16.2 Mbp
16.7 Mbp
17.2 Mbp
17.7 Mbp
18.1 Mbp
18.6 Mbp
19.1 Mbp
19.5 Mbp
19.9 Mbp
20.3 Mbp
20.8 Mbp
21.2 Mbp
21.6 Mbp
22.0 Mbp
22.4 Mbp
22.8 Mbp
23.1 Mbp
23.4 Mbp
23.8 Mbp
24.1 Mbp
24.4 Mbp
24.7 Mbp
25.0 Mbp
25.3 Mbp
25.6 Mbp
25.9 Mbp
26.2 Mbp
26.5 Mbp
26.8 Mbp
27.1 Mbp
27.4 Mbp
27.6 Mbp
27.9 Mbp
28.1 Mbp
28.4 Mbp
28.6 Mbp
28.8 Mbp
29.1 Mbp
29.3 Mbp
29.5 Mbp
29.7 Mbp
29.9 Mbp
30.1 Mbp
30.3 Mbp
30.5 Mbp
30.7 Mbp
30.9 Mbp
31.0 Mbp
31.2 Mbp
31.4 Mbp
31.6 Mbp
31.7 Mbp
31.9 Mbp
32.1 Mbp
32.2 Mbp
32.4 Mbp
32.5 Mbp
32.7 Mbp
32.8 Mbp
32.9 Mbp
33.1 Mbp
33.2 Mbp
33.3 Mbp
33.4 Mbp
33.5 Mbp
33.6 Mbp
33.7 Mbp
33.8 Mbp
33.9 Mbp
34.0 Mbp
34.1 Mbp
34.1 Mbp
34.2 Mbp
34.3 Mbp
34.4 Mbp
34.4 Mbp
34.5 Mbp
34.6 Mbp
34.6 Mbp
34.7 Mbp
34.7 Mbp
34.8 Mbp
34.9 Mbp
34.9 Mbp
35.0 Mbp
35.0 Mbp
35.1 Mbp
35.1 Mbp
35.1 Mbp
35.2 Mbp
35.2 Mbp
35.2 Mbp
35.3 Mbp
35.3 Mbp
35.3 Mbp
35.4 Mbp
35.4 Mbp
35.4 Mbp
35.5 Mbp
35.5 Mbp
35.5 Mbp
35.5 Mbp
35.6 Mbp
35.6 Mbp
35.6 Mbp
35.6 Mbp
35.7 Mbp
35.7 Mbp
35.7 Mbp
35.7 Mbp
35.7 Mbp
35.8 Mbp
35.8 Mbp
35.8 Mbp
35.8 Mbp
35.8 Mbp
35.9 Mbp
35.9 Mbp
35.9 Mbp
35.9 Mbp
35.9 Mbp
35.9 Mbp
36.0 Mbp
36.0 Mbp
36.0 Mbp
36.0 Mbp
36.0 Mbp
36.0 Mbp
36.1 Mbp
36.1 Mbp
36.1 Mbp
36.1 Mbp
36.1 Mbp
36.1 Mbp
36.1 Mbp
36.1 Mbp
36.2 Mbp
36.2 Mbp
36.2 Mbp
36.2 Mbp
36.2 Mbp
36.2 Mbp
36.2 Mbp
36.2 Mbp
36.3 Mbp
36.3 Mbp
36.3 Mbp
36.3 Mbp
36.3 Mbp
36.3 Mbp
file_scan.log

check file for gzip compression: /opt/mosga/snakemake/../gui/uploads/9237305b/744186cafaeb2886bdacd89e
busco.log

Source: eukaryota_odb10
  Value Percentage                Category
0   126      49.41  Complete (single-copy)
1     4       1.57   Complete (duplicated)
2    30      11.76              Fragmented
3    95      37.25                 Missing
barrnap.log


                    
augustus.log


                    
annotation_tools.log